| Rank | Team | Played | Goal Dif | Points |
| 1 | Swindon | 46 | 43 | 93 |
| 2 | Shrewsbury | 46 | 25 | 88 |
| 3 | Crawley Town | 46 | 22 | 84 |
| 4 | Southend | 46 | 29 | 83 |
| 5 | Torquay | 46 | 13 | 81 |
| 6 | Cheltenham | 46 | 16 | 77 |
| 7 | Crewe | 46 | 8 | 72 |
| 8 | Gillingham | 46 | 17 | 70 |
| 9 | Oxford Utd | 46 | 11 | 68 |
| 10 | Rotherham | 46 | 4 | 67 |
| 11 | Aldershot | 46 | 2 | 66 |
| 12 | Port Vale | 46 | 8 | 59 |
| 13 | Bristol Rovers | 46 | -10 | 57 |
| 14 | Accrington Stanley | 46 | -12 | 57 |
| 15 | Morecambe | 46 | 6 | 56 |
| 16 | AFC Wimbledon | 46 | -16 | 54 |
| 17 | Burton Albion | 46 | -27 | 54 |
| 18 | Bradford | 46 | -5 | 50 |
| 19 | Dag & Red | 46 | -22 | 50 |
| 20 | Northampton | 46 | -23 | 48 |
| 21 | Plymouth | 46 | -17 | 46 |
| 22 | Barnet | 46 | -27 | 46 |
| 23 | Hereford | 46 | -20 | 44 |
| 24 | Macclesfield | 46 | -25 | 37 |