Bywater remains out with the back problem that forced him off during the early stages of the defeat at Reading five days ago while Deeney comes back into the reckoning after suspension and will replace academy product James Severn on the bench.
"David will continue in goal. What he did have to do on Saturday he did very well," said boss Nigel Clough. "Saul is back and will be on the bench but Stephen isn't quite ready.
"He is having treatment and we are optimistic he will be available for Sheffield Wednesday at the weekend."